Replication error occurring in log

Replication error in the log:

Unable to store document in Server/Database path (NoteID = xxxxx) from Database
Path (NoteID = yyyyy): entry already in index
Unable to replicate with server : entry already in index

I tried deleting any replication/save conflict documents, but the error still occurs.

Any ideas?

I can't offer you any advice you haven't been given already in several other places. Run updall, fixup, compact, etc. Try making a new replica. Use the NoteID finder and see if you can remove the entry that already exists. Other than that, you may need to call Lotus Support.