There were changes to ND6 that caused the AgentRunner tool to require some upgrades. These could not be completed for 6.0, and we hope to address them in a QMR release of 6. I'm sorry I can't give you the exact release in which it will be fixed, but I can say that development is well aware of the issue and working to resolve it as soon as possible.
Dig Deeper on Java for Lotus Notes Domino
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